PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02453.2.p
Common NameEUGRSUZ_B02453, LOC104432834
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 444aa    MW: 48252.2 Da    PI: 6.1972
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02453.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.1e-17136184255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Eucgr.B02453.2.p 136 EFRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 184
                       69******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.49E-11135191No hitNo description
Gene3DG3DSA:3.30.730.101.5E-16136193IPR001471AP2/ERF domain
SMARTSM003806.8E-31136198IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-15136193IPR016177DNA-binding domain
PROSITE profilePS5103217.319136192IPR001471AP2/ERF domain
PfamPF008476.2E-9137184IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-6227271IPR016177DNA-binding domain
CDDcd000189.57E-13227272No hitNo description
SMARTSM003803.0E-11228276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MLDLNLNVLS AESSYQEEKL SDVSGNQMDE SGTSNSSIVN ADAGDDESSS ARAAGDVHTF  60
QFGIVKADGG GNDAVETKEL FPLKEEECSP GEMPMELSFG NGGSGSGGGS HARVMPQQQS  120
QQAKKSRRGP KSKSSEFRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAQA AARAYDRAAI  180
KFRGVDADIN FHMSDYEEDL KQMKSLSKED FVHILRRQST GFSRGSSKYR GVTLHKCGRW  240
EARMGQFLGK KAYDKAAIRY NGREAVTNFE PSSYEGQMIP VAMNEGSDHN LELNLGMSAP  300
SFGSSVKDAD EHLPCHAETF SGIPNFASAV LGDSALRGLS MTSHHHSSQN CVYPRFFSNE  360
EKDTEQRNEV PSSQGLHWVW PMRDQVSTSA ASVPPSSTAA SSGFPYSVPP YSAAMVASPL  420
SRFPPPYTVA SNSSRCNDQM TSP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02453.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043687.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-99RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A059D4Z10.0A0A059D4Z1_EUCGR; Uncharacterized protein
STRINGXP_010043686.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-95related to AP2.7