PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02465.1.p
Common NameEUGRSUZ_B02465, LOC104432844
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 224aa    MW: 24044.4 Da    PI: 4.9151
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02465.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.91.1e-40531531100
            DUF260   1 aCaaCkvlrrkCa.kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +CaaCk+lrr+Ca ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a
  Eucgr.B02465.1.p  53 PCAACKILRRRCAvEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQDLPESQRADAVSSMVYEAGARIRDPVYGCAGAICQLQKQVSELQA 145
                       7***********8356***************************************************************************** PP

            DUF260  93 elallkee 100
                       +la++++e
  Eucgr.B02465.1.p 146 QLAKAQAE 153
                       ****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.77352154IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-4153151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAVQDMEVSD ASVTNGNAHT SSTTTSSPQS VSPTSSSSPP PPLPPPTPVI ISPCAACKIL  60
RRRCAVEKCV LAPYFPPTEP AKFTIAHRVF GASNIIKLLQ DLPESQRADA VSSMVYEAGA  120
RIRDPVYGCA GAICQLQKQV SELQAQLAKA QAEILTMQHQ QTNLVALLCM EMAQSASQPP  180
AQQFVDNLID TSPTIYQNNS NNNISPFLDE TNVMGSMWEP LWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-42451553112LOB family transfactor Ramosa2.1
5ly0_B3e-42451553112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02465.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043701.11e-164PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR05e-71LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A059D5131e-163A0A059D513_EUCGR; Uncharacterized protein
STRINGXP_010043701.11e-163(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-60LOB domain-containing protein 1