PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02504.1.p
Common NameEUGRSUZ_B02504, LOC104432880
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92361.4 Da    PI: 5.7912
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02504.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-182583357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Eucgr.B02504.1.p 25 KYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                      56789****************************************************97 PP
2START152.92.8e-481643712204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++++ ve+l d+   W +++++ e+      g  g+++
  Eucgr.B02504.1.p 164 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIVEILKDRT-SWFRDCRSLEVFTMFPAGngGTIE 255
                       7899******************************************************9999999999.***********999999999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++ +a+++l+p Rd +++Ry+ +l+ g++v++++S++     p+     ++vRae lpSg+li+p+++g+s +++v+h +l++++++++l
  Eucgr.B02504.1.p 256 LVYTQIYAPTTLAPaRDLWTLRYTTTLENGSLVVCERSLSGSGAGPNpasATQFVRAEILPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVL 348
                       ****************************************9888888788899**************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + +++++ a+l++ +
  Eucgr.B02504.1.p 349 RPLYESSKVVAQRITIAALRYIR 371
                       ******************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-18883IPR009057Homeodomain-like
PROSITE profilePS5007115.2732084IPR001356Homeobox domain
SMARTSM003891.1E-142288IPR001356Homeobox domain
SuperFamilySSF466892.4E-162387IPR009057Homeodomain-like
CDDcd000861.24E-152585No hitNo description
PfamPF000461.1E-152683IPR001356Homeobox domain
CDDcd146861.78E-677116No hitNo description
PROSITE profilePS5084826.662154382IPR002913START domain
CDDcd088755.13E-70158374No hitNo description
SuperFamilySSF559616.32E-33163375No hitNo description
SMARTSM002342.4E-37163373IPR002913START domain
Gene3DG3DSA:3.30.530.202.9E-18163346IPR023393START-like domain
PfamPF018529.5E-46164371IPR002913START domain
PfamPF086705.6E-47699842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MAMTMVPHRE SSSGSINKHL TDSGKYVRYT AEQVEALERV YSECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TTSATTTDAS CDSVVTTPQH SLRDANNPAG LLSIAEETLA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIVEILKDR TSWFRDCRSL  240
EVFTMFPAGN GGTIELVYTQ IYAPTTLAPA RDLWTLRYTT TLENGSLVVC ERSLSGSGAG  300
PNPASATQFV RAEILPSGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVVAQ  360
RITIAALRYI RQIAQETSGE VVYGLGRQPA VLRTFSQRLS RGFNDAVNGF NDGGWSLMNG  420
DGAEDVMIAV TFSKKLNTTS NPANPLSFVG GILCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNVDAYSA ASLKASPFGY PGMRPTRFTG SQIIMPLGHT IEHEEMLEVI RLEGHSLAQE  540
DAFVSRDIHL LQICSGIDEN AVGVCSELIF APIDEMFPDD APLLPSGFRI IPLDSKSSDV  600
QDSLTTNRTL DLTSSLEVGP ASTNCVGDVA PSHGARSVLT IAFQFPFDAN TQDNVAVMAR  660
QYVRSVISSV QRVAMVISPS GLGPSINPKL SQGSPEALTL ANWICQSYSL YLGTELLGSD  720
LLGADSMLKT LWSHQDAILC CSLKSIPVFI FANQAGLDML ETTLVALQDI TLDKIFDESV  780
RKELSPEFAK LMQEGSAYLP SGICMSTMGR HVSYEQAIAW KVLSAEENTV HCLAFSFVNW  840
SFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02504.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043753.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A059D5G50.0A0A059D5G5_EUCGR; Uncharacterized protein
STRINGXP_010043753.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]