PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02591.1.p
Common NameEUGRSUZ_B02591, LOC104432955
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 299aa    MW: 31447.3 Da    PI: 9.3682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02591.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-09104129227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+lC+ f     Ck+Gd+C+FaHg+
  Eucgr.B02591.1.p 104 KTRLCNKFNTAEGCKFGDKCHFAHGE 129
                       8***********************96 PP
2zf-CCCH36.86.3e-12265289126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt+lC +fa+ G C++G+rC+FaHg
  Eucgr.B02591.1.p 265 FKTKLCENFAK-GSCNFGERCHFAHG 289
                       69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-1499134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8100133IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-4102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629102130IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.02E-14167245IPR004088K Homology domain, type 1
SMARTSM003221.2E-10172242IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.9E-15173244IPR004088K Homology domain, type 1
PROSITE profilePS5008413.837173237IPR004088K Homology domain, type 1
PfamPF000131.1E-9175239IPR004088K Homology domain, type 1
CDDcd001055.82E-13177238No hitNo description
Gene3DG3DSA:4.10.1000.104.1E-15262295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-8263294IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7264290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.981264291IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9265289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDFGGGRKRG RPDASSNGNG GPKRSREEAE TFSTGIGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGFKA VSQMLNLGGN PTLPHASRNA APSYPEAPSP TAVKTRLCNK FNTAEGCKFG  120
DKCHFAHGEW ELGKPTGPSY DDPRGMVPPS GRYGGRNEPP PPGLAAAASF GASATAKISI  180
DASLAGPIIG RNGVNSKQIC RVTGAKLSIR EHDSDPNLRN IELEGTFDQI KQASAMVHEL  240
IANVASASRP AMKNSAAHSA PRSNFKTKLC ENFAKGSCNF GERCHFAHGT EELNKPGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02591.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043856.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-117C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A059D5U60.0A0A059D5U6_EUCGR; Uncharacterized protein
STRINGXP_010043856.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-53C3H family protein