PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02591.2.p
Common NameEUGRSUZ_B02591
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 259aa    MW: 27386.9 Da    PI: 8.4973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02591.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-096489227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      kt+lC+ f     Ck+Gd+C+FaHg+
  Eucgr.B02591.2.p 64 KTRLCNKFNTAEGCKFGDKCHFAHGE 89
                      8***********************96 PP
2zf-CCCH37.15.2e-12225249126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt+lC +fa+ G C++G+rC+FaHg
  Eucgr.B02591.2.p 225 FKTKLCENFAK-GSCNFGERCHFAHG 249
                       69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.413125IPR000571Zinc finger, CCCH-type
PfamPF146081.71222No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-145994IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-86093IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6296290IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-46289IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-76489IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.74E-15127205IPR004088K Homology domain, type 1
SMARTSM003221.2E-10132202IPR004087K Homology domain
PROSITE profilePS5008413.837133197IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.2E-15133204IPR004088K Homology domain, type 1
PfamPF000138.7E-10135199IPR004088K Homology domain, type 1
CDDcd001053.04E-13137198No hitNo description
Gene3DG3DSA:4.10.1000.102.4E-15222255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-9223254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.981224251IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7224250IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9225249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MIEFFTFSTS GCPFGEGCHF LHYVPGGFKA VSQMLNLGGN PTLPHASRNA APSYPEAPSP  60
TAVKTRLCNK FNTAEGCKFG DKCHFAHGEW ELGKPTGPSY DDPRGMVPPS GRYGGRNEPP  120
PPGLAAAASF GASATAKISI DASLAGPIIG RNGVNSKQIC RVTGAKLSIR EHDSDPNLRN  180
IELEGTFDQI KQASAMVHEL IANVASASRP AMKNSAAHSA PRSNFKTKLC ENFAKGSCNF  240
GERCHFAHGT EELNKPGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02591.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043856.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R04e-98C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A059D6M40.0A0A059D6M4_EUCGR; Uncharacterized protein
STRINGXP_010043856.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-54C3H family protein