PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02626.1.p
Common NameEUGRSUZ_B02626, LOC104432986
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 586aa    MW: 62627.4 Da    PI: 9.3187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02626.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-057092123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + C+ C+k F r  nL+ H r H
  Eucgr.B02626.1.p 70 FICEVCNKGFQREQNLQLHRRGH 92
                      89*******************88 PP
2zf-C2H212.20.00054146168123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k++  +s+ k H + +
  Eucgr.B02626.1.p 146 WKCEKCSKRYAVQSDWKAHSKIC 168
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-76992No hitNo description
PfamPF121712.9E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997092IPR007087Zinc finger, C2H2
SMARTSM003550.00527092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355130111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-7141166No hitNo description
SMARTSM00355130146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MASTSSTQFF GLGDESQNQM MLQQQSSTTT SSTGPMPPPP KKKRNQPGTP NPDAEVIALS  60
PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTTKDVKRKV YLCPEPTCVH  120
HDPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAQE SARHPSSLNT LGNNLYGNNI GLGLSHQVGS QLPILQTHNH  240
PPSNMLRLGG ASNSSNFSQP PHPMPPPPAT FFKPEAADSL HDLPSHNPLS GLMQLPNLQG  300
NSSASQSNLF NLSFFGNNAA AASDNATTAT AAAANFPSQG FLGQFNGGNN GSNQPSGLFS  360
DDRVGSGFSS LFNASAQNES VVAHMSATAL LQKAAQMGSI TSGNSSSLLG GLGSSSGGGG  420
SAVNRQMGSV NFSGGSGSFP DSGGKLPPQM ESESHLRGLI SSFAGGSSSI FGGGGGHEHE  480
NSFSGFNESN MSLDHHHHHQ DQSSASFCNV NDAKLHQNLT TSMGGSDKLT LDFLGVGGMM  540
RKRTDGGFAH REQQQQQHGT INMSSLDRDR KSEQGSQPFG SSKMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34142214371Zinc finger protein JACKDAW
5b3h_F3e-34142214371Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02626.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043896.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic
TrEMBLA0A059D6190.0A0A059D619_EUCGR; Uncharacterized protein
STRINGXP_010043896.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-115indeterminate(ID)-domain 5