PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B02663.1.p

Common Name

EUGRSUZ_B02663, LOC104433018

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 248aa MW: 26914.2 Da PI: 6.3915

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B02663.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Eucgr.B02663.1.p 88 FSCNYCKRKFYSSQALGGHQNAH 110 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.21E-6	86	116	No hit	No description
PROSITE profile	PS50157	11.406	88	115	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MLPRNSDSGT ENESSDFSTQ VASDACVQEI SVDPSKVTSA TSLDQDDVSL DLTLFCHSNA 60 PAEANAVGES NNTEAVDRAS VVKLPRVFSC NYCKRKFYSS QALGGHQNAH KRERTMAKRA 120 MRMGMFSNRY TSLASLPLHG ATFRSLGIEA HSGVHHQNAV APESRPAVLR GGAKFEKGCM 180 GLPMFVEEDD VVPLFWPGSF RQLDTRDCTS DPSPSVDYVI KGSNVNFVQV TKLPQIETPS 240 PDLTLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B02663.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043932.1	0.0	PREDICTED: zinc finger protein 4 isoform X1
Refseq	XP_010043934.1	0.0	PREDICTED: zinc finger protein 4 isoform X1
Refseq	XP_010043935.1	0.0	PREDICTED: zinc finger protein 4 isoform X1
TrEMBL	A0A059D685	0.0	A0A059D685_EUCGR; Uncharacterized protein
STRING	XP_010043932.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6672	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-41	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Eucgr.B02663.1.p
Entrez Gene	104433018