PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02808.1.p
Common NameEUGRSUZ_B02808
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 131aa    MW: 14575.8 Da    PI: 10.5521
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02808.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26e-1332126299
                       EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+v ++s++l ++++++p   ++eh +g+  +  t tl+  +  sW vkl y  + g+  l +GW +F +   LkegD+++F+l++ ++ el+
  Eucgr.B02808.1.p  32 FTVVIRSHNLLKQNVTVPGGILREHiNGS-MQ--TATLKY-RDGSWPVKLLYYPQHGSGKLLAGWASFHRGTYLKEGDVCLFELVRIDNVELK 120
                       56788999999999***********6333.34..566555.4469*****9977777756677*********************988999999 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v+ fr+
  Eucgr.B02808.1.p 121 VSNFRR 126
                       999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-1525127IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-1426127IPR015300DNA-binding pseudobarrel domain
CDDcd100178.63E-1430125No hitNo description
PROSITE profilePS5086310.40531127IPR003340B3 DNA binding domain
PfamPF023622.4E-1132126IPR003340B3 DNA binding domain
SMARTSM010196.9E-632127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MLASRSSTSK RSKKVTTALK GANEDELQCP SFTVVIRSHN LLKQNVTVPG GILREHINGS  60
MQTATLKYRD GSWPVKLLYY PQHGSGKLLA GWASFHRGTY LKEGDVCLFE LVRIDNVELK  120
VSNFRRNAKI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02808.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724504.11e-93PREDICTED: B3 domain-containing protein REM19-like
TrEMBLA0A059D7B12e-92A0A059D7B1_EUCGR; Uncharacterized protein
STRINGXP_010046516.12e-45(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14804415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-14B3 family protein