PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02809.1.p
Common NameEUGRSUZ_B02809
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 238aa    MW: 27209.5 Da    PI: 9.9113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02809.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.1e-101822254285
                       TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         rsW+vkl y ++ g   l++GW+ F +   LkegD++vF+ +
  Eucgr.B02809.1.p 182 LERSWTVKLLYYRQHGLGKLSAGWSAFQRGTSLKEGDVCVFEPV 225
                       359******9988888889**********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-61555IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-81991IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-56999IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-10160228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-11160227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-8160228No hitNo description
PfamPF023622.9E-7173225IPR003340B3 DNA binding domain
PROSITE profilePS508639.516184237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTSCRRRGDE ENRQSFALET PHFFKIVLSQ TLQIGRLSIP KRFVRKYGKN LPKTLRERIP  60
PALPMGGCEG HLLVFKYVEN SDFHVLIFDK SASEIDYPLM NTDSKKSNLD FVKAVPPIMG  120
DTDDHYNISI ELERLNGFSL KRKEKDKLHL IPFHHKPSKT VPGRVLKGCI DGRTQTATLK  180
YLERSWTVKL LYYRQHGLGK LSAGWSAFQR GTSLKEGDVC VFEPVRIDII ELEVSTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02809.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059D6R91e-175A0A059D6R9_EUCGR; Uncharacterized protein
STRINGXP_010046516.13e-62(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2305334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-08related to vernalization1 1