PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03004.1.p
Common NameEUGRSUZ_B03004, LOC104433269
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 792aa    MW: 90671.6 Da    PI: 6.8235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.00048140167535
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TT CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskaps 35 
                        ++ E+r+R ++ + f   r++lP+a   ++
  Eucgr.B03004.1.p 140 SSILEQRYRTNVGELFGHVRKMLPWA---DQ 167
                       5799*********************6...22 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045582.3E-5410167IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045579.0E-11170260IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
PfamPF007494.6E-120267572IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
SuperFamilySSF523743.38E-86267581No hitNo description
CDDcd008076.01E-138267577No hitNo description
Gene3DG3DSA:3.40.50.6204.0E-39267336IPR014729Rossmann-like alpha/beta/alpha sandwich fold
TIGRFAMsTIGR004401.8E-191268788IPR004514Glutamine-tRNA synthetase
PRINTSPR009873.7E-7271283IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780274285IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009873.7E-7300313IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.101.7E-43340444No hitNo description
PRINTSPR009873.7E-7445455IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6204.0E-39447496IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.104.6E-30497574IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507153.19E-57575785IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039508.9E-42575766IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.105.5E-31584692IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.101.5E-29693784IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MVKEDEARDK ALELFLKIGL DERTAKNTVA NNKVTANLTA VIHEASVTDG CDKSIGNLLY  60
SVATKYPANA LVHRPTLLEY IVSSKIKTTA QLDAAFSFFS DTGSESFKIH EFEEACGVGV  120
EVSVEDIKQT VSGIFEERKS SILEQRYRTN VGELFGHVRK MLPWADQKIV KQIIDTKMYE  180
LLGERTAADN EKPAKKKEKP VKVEEKKVAV VAAPQPSEEE LNPFKDFPQP EDNFKVHTEI  240
FFSDDRVLRC CNSREMLNKH LTVTGGKVFT RFPPEPNGYL HIGHAKAMFV SFGLAKERSG  300
CCYLRFDDTN PEAEKKEYID HIKEIVDWMG WKPFKITYAS DYFQELYDLA VELIKRGHAY  360
VDHQTPDEIK EYREKKMNSP WRDRPIAESL KLFEDMRRGL IEEGKATLRM KQDMQSDNFN  420
MYDLIAYRIK FTPHPHAGDK WCVYPSYDYA HCIVDCLENI THSLCTLEFE TRRASYYWLL  480
HALDLYQPYV WEYSRLNVTN TIMSKRKLNL LVTKKFVDGW DDPRLMTLAG LRRRGVTSTS  540
INAFVRGIGI TRSDGSTIRL DRLEYHIREE LNKTAPRTMV VLYPLKVVIT NLDAGSVMDL  600
EAKKWPDAHI DAAAIYQVPF SKTVYIEQSD FRMKDSKDYY GLAPGKTVML RYAFPIKCTN  660
VILADDKETI VEIHAEYDPS KKTKPKGVLH WVAETSHGVD PLQVEVRLFD KLFLSENPAE  720
LGKDWLDDLN PHSKIVVPSA YAVPSLGEAK VGDRFQFERL GYFVVDEDST SEKLVFNRTV  780
TLRDSYGKGG K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C0.01178830798Glutamine--tRNA ligase
4ye6_A0.0117887775Glutamine--tRNA ligase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044253.10.0PREDICTED: glutamine--tRNA ligase, cytoplasmic
SwissprotQ8W4F30.0SYQ_ARATH; Glutamine--tRNA ligase, cytoplasmic
TrEMBLA0A059D7540.0A0A059D754_EUCGR; Uncharacterized protein
STRINGXP_010044253.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM425234
Publications ? help Back to Top
  1. Duchêne AM, et al.
    Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(45): p. 16484-9
    [PMID:16251277]
  2. Berg M,Rogers R,Muralla R,Meinke D
    Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis.
    Plant J., 2005. 44(5): p. 866-78
    [PMID:16297076]