PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03106.1.p
Common NameEUGRSUZ_B03106, LOC104433344
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 570aa    MW: 60287.5 Da    PI: 5.6751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09378426355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Eucgr.B03106.1.p 378 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 426
                       58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-17373444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-11373430No hitNo description
PROSITE profilePS5088815.485375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16376442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6378426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDSDDKDKFE PAKQNEDPMN FNSASISSDW QFCSANLSSA PMNLVRPGNS MAVCREDLIG  60
SSSCSSAPMA ESFGPALWDH LSTMENLGFV NISAQNNLST PHLLGIRKVG PESVRGDIGW  120
NPPSSMLKGG LFVPSALGTL PITEGLPHFP TDSGFIERAA RFSCFSGGNL GSVMNPFGIA  180
ENAGLYQIAG GLVPGPRDVF PASCPKPLPG AQSEKNEMNI EACRDVHLAA TQGTPQGSPL  240
KNEGESESLA RSRGEAKQGA TAGSSNESDE AEFSGGGSGG QDNPSMLEVT GGEGSAKGFD  300
CKKRKRSGED AELDKAKGAP QLAESPKDDS RTQQKLENNP SSNTSKATAK NNKPGTQGSD  360
PQKEDYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLATVN PRLDFNIEGL LAKDLLHSRA GPSSTLGLPH DMPMSFPPMH  480
LPPPGLMQGG PTGIGRPVDP LRRPMQNQMI PLAGGFKEPS QLPHPWEDEL NNVVQMGFVG  540
GGGGGSGAAP SGQDAEGSVP PPSHTKVEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301306KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03106.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044347.10.0PREDICTED: transcription factor bHLH49
RefseqXP_018724586.10.0PREDICTED: transcription factor bHLH49
TrEMBLA0A059D6V70.0A0A059D6V7_EUCGR; Uncharacterized protein
STRINGXP_010044347.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-100bHLH family protein