PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03113.3.p
Common NameEUGRSUZ_B03113, LOC104433351
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 307aa    MW: 33766 Da    PI: 5.9913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03113.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.3e-165099255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  Eucgr.B03113.3.p 50 RSKHSVTEQRRRSKINERFQILRDLIPNS----DQKRDTASFLLEVIEYVRYLQ 99
                      899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-2347120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-1947120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3744898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-135099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-1450103No hitNo description
SMARTSM003534.7E-1254104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRSGKGSQEY EDFEEEDLNS KRDGPSSNVS NSSNSANPKD KSSDKAHAIR SKHSVTEQRR  60
RSKINERFQI LRDLIPNSDQ KRDTASFLLE VIEYVRYLQE KVHKYEDSYQ GWSSEPTKLM  120
PWRNSHWRVQ SVVSPPQAMK NGSGPASSYP GKLEDNSTGT TPNMLASSQN TSEIDPGRDL  180
SSKFMVQQSE RPFPDAQPME CTADTASDQQ EDLTIEGGTI SISSVYSQGL LNSLTNALQT  240
AGVDLSQARI SVQIDLGKRA NRGVLATGTS IPMDHGSPNP GNSTMAHVTD ARGEEGLDQV  300
QKRQKT*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03113.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044357.10.0PREDICTED: transcription factor BIM2 isoform X2
SwissprotQ9CAA41e-110BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A059D7T80.0A0A059D7T8_EUCGR; Uncharacterized protein
STRINGXP_010044355.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-108BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]