PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03164.1.p
Common NameEUGRSUZ_B03164
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 453aa    MW: 50454.6 Da    PI: 8.3312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03164.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012390412123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp+C ++F++   L  H r+H
  Eucgr.B03164.1.p 390 HECPICFRVFRSGQALGGHKRSH 412
                       79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-6326IPR007087Zinc finger, C2H2
SMARTSM003552.1325IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280525IPR007087Zinc finger, C2H2
PROSITE profilePS501579.95178105IPR007087Zinc finger, C2H2
SMARTSM003550.1878100IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.09E-679100No hitNo description
PfamPF139125.0E-680102IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-6385412No hitNo description
PfamPF139121.2E-10389412IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037390412IPR007087Zinc finger, C2H2
SMARTSM003550.17390412IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDFVCKYCNK RYPCGRSLGG HLSSHKIVDG LAGEDGRHCN DHGGKEFRAE GNSGHCLREN  60
QKETRSFEDL GSKLRVGNVC RECGKGFQSL KALCGHMACH SEKEKGTNHR KDELEYSEKQ  120
ILEMDVVPDS EASAQIQCRR SKRIKCRVPE KILVSGSSAV SEIGQEQEEV AKCLMMLSRD  180
TSHFKGACTW IRDGSNHNSD PFEAKSLSSD VRSGKSGEID VSNSYCSGYV RIGVKRTESD  240
RSVDDSISIR ELKNHKLVCG SKASEDGVEW RKLLNRIKHE AEGVEGTIRE ALDVSKKRVE  300
NDMQRSFSDW KNGSVIGEKI FDSPMKLAKH KDCHKKLKMS ASSEYESSKA GGEIDTSHNP  360
ARVIRDQEFC TGETATRKEK KTGTRKNNRH ECPICFRVFR SGQALGGHKR SHFLAGSKDK  420
AMATQQDVHK VPASIDLNLP AWEEENGEAG LLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03164.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724608.10.0PREDICTED: uncharacterized protein LOC104433394
RefseqXP_018724609.10.0PREDICTED: uncharacterized protein LOC104433394
TrEMBLA0A059D7Z10.0A0A059D7Z1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010044422.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-52C2H2-like zinc finger protein