PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B03310.1.p

Common Name

EUGRSUZ_B03310

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

YABBY

Protein Properties

Length: 188aa MW: 21228.1 Da PI: 5.6101

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B03310.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	196	1.7e-60	7	165	3	169
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees 91 + s seq+CyvqC+fC+t+l+vsvP +sl++vvtvrCGhCt+llsvn++kas +lla sh ++ +++++e+++++nve ++ Eucgr.B03310.1.p 7 LLSLSEQICYVQCGFCTTVLLVSVPCSSLSSVVTVRCGHCTTLLSVNMMKASfvplHLLAPLSH---DGP-----KEEFQEMEVQKNVELYS- 90 6789******************************************9998433333333333...222.....22233333333333333. PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 + v+s++++++e+ ++r v++PPekrqr Psaynrfikeei+r+ka+nP+i h+eafs aaknWa fP+ f+ Eucgr.B03310.1.p 91 -PSFVNSSEVEDEETIAITR--VVNKPPEKRQRTPSAYNRFIKEEIRRLKAQNPNIPHKEAFSQAAKNWAQFPQHQFK 165 .3333333444555555554..699**********************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.2E-63	10	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-9	109	162	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.9E-7	112	163	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MATIDHLLSL SEQICYVQCG FCTTVLLVSV PCSSLSSVVT VRCGHCTTLL SVNMMKASFV 60 PLHLLAPLSH DGPKEEFQEM EVQKNVELYS PSFVNSSEVE DEETIAITRV VNKPPEKRQR 120 TPSAYNRFIK EEIRRLKAQN PNIPHKEAFS QAAKNWAQFP QHQFKGDNGE SFVQEVEREK 180 SISDDSIE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B03310.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018720233.1	1e-115	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	3e-62	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A059D8Z4	1e-137	A0A059D8Z4_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010046639.1	1e-137	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8044	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-51	YABBY family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B03310.1.p

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]