PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03372.1.p
Common NameEUGRSUZ_B03372
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 257aa    MW: 28886.8 Da    PI: 7.8413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03372.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00017121143123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C k+F ++  L  H++ H
  Eucgr.B03372.1.p 121 FECQYCAKTFANSQALGGHQNAH 143
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-6113147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.69E-7117148No hitNo description
PROSITE profilePS5015711.988121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSSKSFSSLI PPTWDIDIGL DSGSIRDDDS SSCIQKQQKK KVKLFGFDLT TIAACENRDE  60
EEGTPKSDLV ERDDHESVNS SNTDPSSSRD DKYKTLLANS NIREGSSSVL TSNTHRSKKL  120
FECQYCAKTF ANSQALGGHQ NAHKKERLRK KKLQLQARRA SLQSYLQAYR NYYYRSSNGV  180
LDFRGSNDDQ WYIDPSSCYL SAPGDQLALC DQEPQISFAD VSDHREGLPL GRSTRVQNWH  240
APDVLPANTG YYQHKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03372.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724656.10.0PREDICTED: zinc finger protein GIS-like
TrEMBLA0A059D7P80.0A0A059D7P8_EUCGR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-08zinc finger protein 3