PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03456.1.p
Common NameEUGRSUZ_B03456, LOC104433640
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 410aa    MW: 47045.7 Da    PI: 6.9941
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03456.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.74.7e-26101180286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W ++e+++Li++rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k+ykk k ++++     s +++y++++e
  Eucgr.B03456.1.p 101 WVQDETRCLIALRREMDSLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEYKKAKYQDRG-----SAKMSYYKEIE 180
                       ******************************************************************998.....46788999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-591163IPR009057Homeodomain-like
PROSITE profilePS500908.45593157IPR017877Myb-like domain
SMARTSM007177.9E-697159IPR001005SANT/Myb domain
CDDcd122037.84E-2999164No hitNo description
PfamPF138372.5E-20100182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MYLSEKPRPI DFYKEESAPR DMIIEVVSSN GDIPPHHPHP HPHPHPHQHQ HPHPHQHPHQ  60
HQAPPAPPPP PPPQPHHQMI LGESSGEDLE VKAPKKRAET WVQDETRCLI ALRREMDSLF  120
NTSKSNKHLW EQISSKMREK GFDRSPTMCT DKWRNLLKEY KKAKYQDRGS AKMSYYKEIE  180
EILRERSKNN QYKSPTASAL KVDPYMQFSD KGIEDAGMTF GPVEASGRPT LNLERRLDHD  240
GHPLAITTAE AVAANGVPPW NWRETPGNGE SQSYGGRVIS VKWGDYTRRV GIDGTADSIK  300
EAIKSAFRLR TKRAFWLEDE DQVIRSLDRD MPLGNYNLQL DEGLAIKVCL YDESGHISVH  360
PEDKIFYTED DYRDFLARRG WTCLRELDGY RNIDNMDDLR PGGIYRGVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A9e-4695178186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03456.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044755.10.0PREDICTED: trihelix transcription factor GT-1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A059D8Y40.0A0A059D8Y4_EUCGR; Uncharacterized protein
STRINGXP_010044755.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]