PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03500.1.p
Common NameEUGRSUZ_B03500, LOC104433681
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 489aa    MW: 53532 Da    PI: 8.4837
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.81.1e-41187263177
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+vsg+e+rfCqqCsrfh lsefDe+krsCr+rL++hn+rrrk+ 
  Eucgr.B03500.1.p 187 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCPKVIVSGIERRFCQQCSRFHGLSEFDEKKRSCRKRLSDHNARRRKPP 263
                       6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-33181249IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133185262IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-39186267IPR004333Transcription factor, SBP-box
PfamPF031101.5E-31188261IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSAISLMEWN AKPPLQWEWE NLMMFGSKAT ETSKPLRATD WGIEAEELID PGSLFLYENG  60
GGSSSCTSID PGYTSVSKSS KSASVNSSST DELKISKFSV EAHEGFSLQS SKKELAVNDF  120
TGMSPALEPS VCSGEPLLSL KLGKRIYFEN TIDKDHVKTQ DLPSVMKSPD TPAKRNKSNC  180
QGTSAPRCQV EGCNLDLSSA KDYHRKHRVC ESHSKCPKVI VSGIERRFCQ QCSRFHGLSE  240
FDEKKRSCRK RLSDHNARRR KPPPDVTQLN PARLSALFYG GMQQLNPVLS RAPAIHTRST  300
ASFKWADTQD TKLIEKGPKL PIGGGVGECI TIPSNGIPDT LKSTGLGKSY NELLSSKGMP  360
VKTTGGGLGE SLASPNLDPS QNIQRALSLL STDSRDPIRQ KSASHEHSVH TNNNCMSRDQ  420
SSMYGFGQGS RLASSGYWHA EQRPKHSQTH ILNPHNESNI ISFGGSSMQE CLFSEARHEF  480
SFDSAQLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-27182261484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243260KKRSCRKRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4795450.0AB479545.1 Eucalyptus grandis mRNA for transcription factor squamosa promoter binding protein-like, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044819.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010044820.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_018724685.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A059D8Q50.0A0A059D8Q5_EUCGR; Uncharacterized protein
STRINGXP_010044819.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-72squamosa promoter binding protein-like 2