PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03514.1.p
Common NameEUGRSUZ_B03514
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 186aa    MW: 20317.6 Da    PI: 11.3447
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03514.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.2e-25122172151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       krien+s rqvtfskRrng++KKA EL +LCd+ev++++fss+gk y ++s
  Eucgr.B03514.1.p 122 KRIENNSSRQVTFSKRRNGLIKKARELAILCDVEVSLLVFSSRGKPYVFCS 172
                       79*******************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.469114174IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-35114173IPR002100Transcription factor, MADS-box
CDDcd002651.83E-33115178No hitNo description
SuperFamilySSF554556.67E-27115174IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-25116136IPR002100Transcription factor, MADS-box
PfamPF003195.0E-25123170IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-25136151IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-25151172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRVGGKREQN GRVFLIFPSF FPFSGDYGER RIASASSLLH LLAGSLAFES APGLGQREGD  60
IASAGDSIFF SSFPFPLIFP LSLSLSLVGP PQTQRSLSLS LAVSSRFGRV GEKMGRKKLV  120
LKRIENNSSR QVTFSKRRNG LIKKARELAI LCDVEVSLLV FSSRGKPYVF CSGNNRCVPL  180
HLLLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14114174161MEF2C
5f28_B1e-14114174161MEF2C
5f28_C1e-14114174161MEF2C
5f28_D1e-14114174161MEF2C
6byy_A1e-14114174161MEF2 CHIMERA
6byy_B1e-14114174161MEF2 CHIMERA
6byy_C1e-14114174161MEF2 CHIMERA
6byy_D1e-14114174161MEF2 CHIMERA
6bz1_A1e-14114174161MEF2 CHIMERA
6bz1_B1e-14114174161MEF2 CHIMERA
6bz1_C1e-14114174161MEF2 CHIMERA
6bz1_D1e-14114174161MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03514.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044832.21e-121PREDICTED: MADS-box protein FLOWERING LOCUS C isoform X1
TrEMBLA0A059D9111e-127A0A059D911_EUCGR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.23e-26MIKC_MADS family protein