PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B03516.1.p

Common Name

EUGRSUZ_B03516

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 96aa MW: 11088.1 Da PI: 10.5363

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B03516.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.9	1.2e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Eucgr.B03516.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSHRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.333	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-31	2	65	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.14E-40	2	61	No hit	No description
PRINTS	PR00404	2.2E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSH RGKLYEFCSS 60 SSTPIDGFFT DGVVTFRHKE RNLILLWFLF MLSFI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-19	1	61	1	61	MEF2C
5f28_B	1e-19	1	61	1	61	MEF2C
5f28_C	1e-19	1	61	1	61	MEF2C
5f28_D	1e-19	1	61	1	61	MEF2C
6byy_A	2e-19	1	61	1	61	MEF2 CHIMERA
6byy_B	2e-19	1	61	1	61	MEF2 CHIMERA
6byy_C	2e-19	1	61	1	61	MEF2 CHIMERA
6byy_D	2e-19	1	61	1	61	MEF2 CHIMERA
6bz1_A	2e-19	1	61	1	61	MEF2 CHIMERA
6bz1_B	2e-19	1	61	1	61	MEF2 CHIMERA
6bz1_C	2e-19	1	61	1	61	MEF2 CHIMERA
6bz1_D	2e-19	1	61	1	61	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B03516.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC108759	4e-58	AC108759.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence.
GenBank	AK072867	4e-58	AK072867.1 Oryza sativa Japonica Group cDNA clone:J023143P16, full insert sequence.
GenBank	AP014965	4e-58	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	4e-58	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBank	FJ750936	4e-58	FJ750936.1 Oryza sativa clone KCS108B10 MADS-box transcription factor 8 mRNA, complete cds.
GenBank	OSU78892	4e-58	U78892.1 Oryza sativa MADS box protein (OsMADS8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007158666.1	1e-36	hypothetical protein PHAVU_002G1723001g, partial
Swissprot	Q8LLR0	1e-36	MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBL	A0A059D988	5e-63	A0A059D988_EUCGR; Uncharacterized protein
STRING	XP_007158666.1	4e-36	(Phaseolus vulgaris)
STRING	cassava4.1_033922m	5e-37	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	6e-39	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B03516.1.p

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]