PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B03520.1.p

Common Name

EUGRSUZ_B03520, LOC104433698

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 211aa MW: 23489.5 Da PI: 9.0593

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B03520.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.2	7.1e-33	130	188	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H h+ Eucgr.B03520.1.p 130 LDDGYRWRKYGQKAVKNNKFPRSYYRCTFHGCNVKKQVQRLTKDEGMVVTTYEGMHSHP 188 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.7E-34	115	188	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-29	122	189	IPR003657	WRKY domain
PROSITE profile	PS50811	29.861	125	190	IPR003657	WRKY domain
SMART	SM00774	1.4E-38	130	189	IPR003657	WRKY domain
Pfam	PF03106	2.5E-26	131	188	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MNIHCDEPLS SSLSFMENLS YSSSLLPCPP SPPLSSSSPS FLSLNPRLTG LGAYNAEFKG 60 HGDNNIEQSG YLGLDMSNSS PLDHRRVPEA PAAVDENDAE NALKAVKKKG GKKVRKPKYA 120 FQTRSQVDIL DDGYRWRKYG QKAVKNNKFP RSYYRCTFHG CNVKKQVQRL TKDEGMVVTT 180 YEGMHSHPIE KSTENFEHIL SQLQIYGASL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-27	120	189	7	76	Probable WRKY transcription factor 4
2lex_A	3e-27	120	189	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B03520.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010044844.1	1e-157	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A059D993	1e-156	A0A059D993_EUCGR; Uncharacterized protein
STRING	XP_010044844.1	1e-157	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-57	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	Eucgr.B03520.1.p
Entrez Gene	104433698