PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03537.1.p
Common NameEUGRSUZ_B03537, LOC104433712
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 254aa    MW: 28785.7 Da    PI: 9.6554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03537.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.6e-51141421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelv +yL++kv + +l++ ++i+ev+++k++PwdLp +++  ++e yfFs+r+ ky++g+r+nrat sgyWkatg d++++
  Eucgr.B03537.1.p  14 LPPGFRFHPTDEELVLQYLRRKVYSFPLPA-SIIPEVEVCKSDPWDLPGQCDL-DQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDRQIV 104
                       79****************************.89***************76655.789************************************ PP

               NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+   ++++vg+kktLvfy+g+ p+g+ktdW+mheyrl
  Eucgr.B03537.1.p 105 SSrgsQSQVVGMKKTLVFYRGKPPSGSKTDWIMHEYRL 142
                       *97777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-589175IPR003441NAC domain
PROSITE profilePS5100557.2814175IPR003441NAC domain
PfamPF023651.3E-2615142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDKLNFVKNG VLRLPPGFRF HPTDEELVLQ YLRRKVYSFP LPASIIPEVE VCKSDPWDLP  60
GQCDLDQERY FFSTREAKYP NGNRSNRATV SGYWKATGID RQIVSSRGSQ SQVVGMKKTL  120
VFYRGKPPSG SKTDWIMHEY RLVNPEASVP PKIMNLNQTP VEPMESWVLC RIFLKRRSSK  180
NEGETPVPCQ NLKEAPKSRK NKPVFYDFMT RDLNLAPSSS SSGSSGVTEV SSHNNTDEHE  240
ESSCNSLRKA LKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-511218015170NO APICAL MERISTEM PROTEIN
1ut4_B3e-511218015170NO APICAL MERISTEM PROTEIN
1ut7_A3e-511218015170NO APICAL MERISTEM PROTEIN
1ut7_B3e-511218015170NO APICAL MERISTEM PROTEIN
4dul_A3e-511218015170NAC domain-containing protein 19
4dul_B3e-511218015170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03537.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044858.10.0PREDICTED: NAC domain-containing protein 83 isoform X1
SwissprotQ9FY933e-94NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A059D8T70.0A0A059D8T7_EUCGR; Uncharacterized protein
STRINGXP_010044858.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-86NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]