PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03543.2.p
Common NameEUGRSUZ_B03543
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 388aa    MW: 41085.5 Da    PI: 5.096
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03543.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.5e-061748536
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                       C+ + + ++ l+C+++   lC  C  + H+ 
  Eucgr.B03543.2.p 17 PCDFCTDRPAVLYCRSDAAKLCLLCDRHVHSA 48
                      7**************************99954 PP
2zf-B_box171.3e-055890335
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                       ++C++++  +++  C +++  lC+dC    H 
  Eucgr.B03543.2.p 58 SQICDNCGAAPASDRCSTDKLDLCQDCDWDAHA 90
                      579************************988885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-111360IPR000315B-box-type zinc finger
PROSITE profilePS501199.3431360IPR000315B-box-type zinc finger
CDDcd000219.84E-81648No hitNo description
PfamPF006431.4E-51755IPR000315B-box-type zinc finger
CDDcd000212.35E-660103No hitNo description
SMARTSM003360.5161103IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MASPGSRTPA GERAVVPCDF CTDRPAVLYC RSDAAKLCLL CDRHVHSANL LSRKHLRSQI  60
CDNCGAAPAS DRCSTDKLDL CQDCDWDAHA ASPVASSHHR ARIDGFSGCP SPLDLASLWG  120
LDLADGGKKS SAIARNDGGQ LMQEVISSME GWAYGAGANG FGFQDLMVPN DAGLAAPYPG  180
AVKQGSTAGR TSCGRRKQEM HRQLVELLNG DFEDNSDGGG GAGGGGSGEG GDNLVPRTPN  240
RTAAAWPENG EGICGEQRHG SDGVDAVVVD HHQPFQQQPT FTSLLMFPTQ RDLEESGRGV  300
VGAGTSNVGG QSTQIWDFNL GRLRSQEEAS AVEVGYGQNS EGFMIKSYNE LMKDTSITTT  360
KMLGDVYQLN GYVMPKDISS YNVSQFK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03543.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044864.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A059D9B70.0A0A059D9B7_EUCGR; Uncharacterized protein
TrEMBLA0A059D9W50.0A0A059D9W5_EUCGR; Uncharacterized protein
STRINGXP_010044864.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.22e-57B-box type zinc finger protein with CCT domain