PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03566.1.p
Common NameEUGRSUZ_B03566
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 397aa    MW: 43290.8 Da    PI: 9.0303
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03566.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05628123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C+ C+k F r  nL+ H r H
  Eucgr.B03566.1.p  6 YICEVCHKGFQRDQNLQLHRRAH 28
                      89*******************98 PP
2zf-C2H213.40.0002282104123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H + +
  Eucgr.B03566.1.p  82 WKCDKCSKRYAVQSDWKAHTKIC 104
                       58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.59E-6528No hitNo description
PROSITE profilePS5015711.198628IPR007087Zinc finger, C2H2
SMARTSM003550.024628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.59E-677102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MATNRYICEV CHKGFQRDQN LQLHRRAHNL PWKLKQRPST QAKKRVYICP EANCVHHDPS  60
RALGDLTGIK KHYCRKHGDK KWKCDKCSKR YAVQSDWKAH TKICGTREYR CECGTIFSRK  120
DSFVTHRAFC DASAEESNRM NQNLTASGGG MSQNQTQEVL NPSLPGDSSS NMNSMMNLSF  180
TNEDMDASLR PLALNSAGVV IPAIVDPFNT PGASRACMSS IGGSNSVSSL SMASAYTSAT  240
ALLQKAAEMG AKISDDTISP ILFRGFSGYS AGGSVNSSGS VQDGRSAVNN MKPRLYVGKH  300
KAFDKKMEME TPCTSYPVSQ VDLADSALFM QDSRNAGNIL GGEYYTGGAE RMTVDFLGVH  360
PAGHSRTGVK RSHDGSMIGL RQLTAPEGLQ NLHPDW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-3278141366Zinc finger protein JACKDAW
5b3h_F6e-3278141366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03566.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046678.10.0PREDICTED: protein indeterminate-domain 12
SwissprotQ9SCQ68e-89IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A059D9Z10.0A0A059D9Z1_EUCGR; Uncharacterized protein
STRINGXP_010046678.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1801789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-88indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]