PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B03703.1.p

Common Name

EUGRSUZ_B03703, LOC104435695

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 249aa MW: 28132.1 Da PI: 4.7722

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B03703.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.7	3.2e-38	54	184	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p GfrF+Ptd+el+ +yLk+kv+g+++++ +v+++vd+yk++P L + + + +ewyfF+++d+k+++ +r++r t sg+W tgkd Eucgr.B03703.1.p 54 PDGFRFDPTDQELIIHYLKPKVAGDPIPIGDVFADVDLYKFDPGMLIEnhqGAGIDGDEWYFFTPSDTKHPSRSRPTRFTPSGFWWVTGKDSV 146 89******************************************742223334778*****************************99 PP NAM 92 vlskkgelvglkktLvfykg.rapkgektdWvmheyrle 129 + +++++g k +L+fy+ +++++ t W+mheyrle Eucgr.B03703.1.p 147 IRM-ENKTIGYKSSLAFYRVdSQSRSDGTAWCMHEYRLE 184 999.9999******8746777889*******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-45	50	215	IPR003441	NAC domain
PROSITE profile	PS51005	44.317	53	216	IPR003441	NAC domain
Pfam	PF02365	8.0E-23	54	183	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MEKNDQSHNR DRDDQPEGMH VDGQLKVGVD PCTPSSSQEL VASPPSPPSL ADFPDGFRFD 60 PTDQELIIHY LKPKVAGDPI PIGDVFADVD LYKFDPGMLI ENHQGAGIDG DEWYFFTPSD 120 TKHPSRSRPT RFTPSGFWWV TGKDSVIRME NKTIGYKSSL AFYRVDSQSR SDGTAWCMHE 180 YRLEEDEKRD RASVDGKKGG KDKMLDEWVL CKVYTPKHGQ QSDLSPKERD RPNLDWPDGD 240 GDCRQFSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-37	47	221	11	170	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-37	47	221	11	170	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-37	47	221	11	170	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-37	47	221	11	170	NO APICAL MERISTEM PROTEIN
3swm_A	5e-37	47	221	14	173	NAC domain-containing protein 19
3swm_B	5e-37	47	221	14	173	NAC domain-containing protein 19
3swm_C	5e-37	47	221	14	173	NAC domain-containing protein 19
3swm_D	5e-37	47	221	14	173	NAC domain-containing protein 19
3swp_A	5e-37	47	221	14	173	NAC domain-containing protein 19
3swp_B	5e-37	47	221	14	173	NAC domain-containing protein 19
3swp_C	5e-37	47	221	14	173	NAC domain-containing protein 19
3swp_D	5e-37	47	221	14	173	NAC domain-containing protein 19
4dul_A	5e-37	47	221	11	170	NAC domain-containing protein 19
4dul_B	5e-37	47	221	11	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B03703.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046701.1	0.0	PREDICTED: NAC transcription factor ONAC010
TrEMBL	A0A059D9B1	0.0	A0A059D9B1_EUCGR; Uncharacterized protein
STRING	XP_010046701.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35315	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	2e-38	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	Eucgr.B03703.1.p
Entrez Gene	104435695