PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03716.1.p
Common NameEUGRSUZ_B03716, LOC104433864
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 472aa    MW: 52677.4 Da    PI: 6.1602
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03716.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.11.4e-137464671373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lLl+c ++v++g+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++s+++l kal++++ s     +el ++kl++e++P+lk 
  Eucgr.B03716.1.p  46 LIHLLLACTNHVANGNLENANIALEQISQLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKIS--LLPDELLVRKLYFELFPFLKS 136
                       689*************************************************************999998..79******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       +++++Nq Ilea+e+e++vHiiD+++ +++QW+aLl++L++R+egpp+lRiTg+++    +ke l  +++ L++ Ae+l++pf+fn+ ++++l
  Eucgr.B03716.1.p 137 AFVLTNQSILEAMESEKMVHIIDLNAAEPTQWIALLRSLNTRSEGPPHLRITGIHQ----HKEVLDLMARSLTEEAERLDIPFQFNP-IVSKL 224
                       ********************************************************....9**************************.7999* PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll............................................................desvs 219
                       e+le+e+Lrvk+gEala+++vlqlh+ll                                                            + sv 
  Eucgr.B03716.1.p 225 ENLEIEKLRVKTGEALAISSVLQLHSLLafddenhqrrsplpfknmngtsshrvllmsqntlgeplekdlangsspstdsatssllsvNASV- 316
                       *******************************************************************************9987765444444. PP

              GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312
                          + d++L+++++lsPkv+vv+eq+++hn++++ler++eal+ y+a+fd+le++++r+s er kvE++l+g+ei+n+v+cegaer+erhe+l
  Eucgr.B03716.1.p 317 ---KMDNFLNALWGLSPKVMVVTEQDSNHNGSTLLERLVEALHSYAAMFDCLESTVSRTSLERLKVEKMLFGEEIKNIVSCEGAERKERHEKL 406
                       ...4566************************************************************************************** PP

              GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                        kW +rl+ aGF++vpls+    qak l++ ++ d y+++ee+g++v++W+drpL+svSaW
  Eucgr.B03716.1.p 407 DKWIQRLDLAGFGNVPLSYCGRLQAKGLMQGYNCDAYKIKEENGCVVMCWQDRPLFSVSAW 467
                       *********************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.84820448IPR005202Transcription factor GRAS
PfamPF035144.9E-13546467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MFQDDGSSSV TSSSLQFCSL MSLSPGFGSP HSLLKELKSE ERGLYLIHLL LACTNHVANG  60
NLENANIALE QISQLASPDG DTMQRIAAYF TEALADRILK SWPGLHKALN STKISLLPDE  120
LLVRKLYFEL FPFLKSAFVL TNQSILEAME SEKMVHIIDL NAAEPTQWIA LLRSLNTRSE  180
GPPHLRITGI HQHKEVLDLM ARSLTEEAER LDIPFQFNPI VSKLENLEIE KLRVKTGEAL  240
AISSVLQLHS LLAFDDENHQ RRSPLPFKNM NGTSSHRVLL MSQNTLGEPL EKDLANGSSP  300
STDSATSSLL SVNASVKMDN FLNALWGLSP KVMVVTEQDS NHNGSTLLER LVEALHSYAA  360
MFDCLESTVS RTSLERLKVE KMLFGEEIKN IVSCEGAERK ERHEKLDKWI QRLDLAGFGN  420
VPLSYCGRLQ AKGLMQGYNC DAYKIKEENG CVVMCWQDRP LFSVSAWMCR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-65294701380Protein SCARECROW
5b3h_D2e-65294701380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03716.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045038.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_010045039.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A059D8X00.0A0A059D8X0_EUCGR; Uncharacterized protein
STRINGXP_010045038.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]