PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B03855.1.p

Common Name

EUGRSUZ_B03855

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bZIP

Protein Properties

Length: 509aa MW: 56684.4 Da PI: 7.1534

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B03855.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.3e-10	193	228	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 k rr+++NReAAr+sR+RKka++++Le +L+ Eucgr.B03855.1.p 193 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLT 228 6889*************************8655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-8	186	236	No hit	No description
SMART	SM00338	4.7E-6	189	256	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	192	236	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.9E-8	193	230	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.84E-7	194	237	No hit	No description
CDD	cd14708	3.27E-21	194	245	No hit	No description
PROSITE pattern	PS00036	0	197	212	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.4E-32	285	360	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MASQRLGETG LSEAGPSSDH HHHHHHHVPY SVLGINAPSS SFINQEGPAF DFGELEQAIV 60 LQEVSIRNDE DHKAAFHSSG RPSETLEMFP AWPMKFQQTP TTTRSSGNSE GSGANTLSTA 120 LLSSSKTETQ LELESPISNK ASSSSSSAHH QRPQQQEMAG VVSQDPPGSS RSPQDNNKKK 180 GSAGSTSEKH LDAKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIKLTHM EQELQRARSQ 240 GLLLGAYGGA SGNISSGEFK KHVLFIGAAV FDVEYARWLD DDHRHMSELR TALKAHLSDS 300 DLRMIVDGYI SHYDEFFRIK GVAARTDVFH LLTGMWCSPA ERCFLWMGGF RPYDLIKMLR 360 PQLDLSTEQQ FMGIYSLEQS LQQAEEALSQ GFEQLQHSLI DTVASGPLVD SMQLMAVSLS 420 KLSNLENFVL QADNLRQQTL HQLWRTLTVR QAGRCILMIG EYYGRLRALS SLWSSRPREN 480 SMNDDGSCQT STDLQAFQSA QSHFPPFR*

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MASQRLGETG LSEAGPSSDH HHHHHHHVPY SVLGINAPSS SFINQEGPAF DFGELEQAIV  60
LQEVSIRNDE DHKAAFHSSG RPSETLEMFP AWPMKFQQTP TTTRSSGNSE GSGANTLSTA  120
LLSSSKTETQ LELESPISNK ASSSSSSAHH QRPQQQEMAG VVSQDPPGSS RSPQDNNKKK  180
GSAGSTSEKH LDAKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIKLTHM EQELQRARSQ  240
GLLLGAYGGA SGNISSGEFK KHVLFIGAAV FDVEYARWLD DDHRHMSELR TALKAHLSDS  300
DLRMIVDGYI SHYDEFFRIK GVAARTDVFH LLTGMWCSPA ERCFLWMGGF RPYDLIKMLR  360
PQLDLSTEQQ FMGIYSLEQS LQQAEEALSQ GFEQLQHSLI DTVASGPLVD SMQLMAVSLS  420
KLSNLENFVL QADNLRQQTL HQLWRTLTVR QAGRCILMIG EYYGRLRALS SLWSSRPREN  480
SMNDDGSCQT STDLQAFQSA QSHFPPFR*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B03855.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010045211.1	0.0	PREDICTED: transcription factor TGA2.2 isoform X1
Refseq	XP_010045212.1	0.0	PREDICTED: transcription factor TGA2.2 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A059DAD5	0.0	A0A059DAD5_EUCGR; Uncharacterized protein
STRING	XP_010045211.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-173	bZIP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B03855.1.p

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]