PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03926.1.p
Common NameEUGRSUZ_B03926
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 420aa    MW: 45975.4 Da    PI: 9.163
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03926.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232e-07243265123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C++Cgk F+r  nL+ H+r H
  Eucgr.B03926.1.p 243 HYCQICGKGFKRDANLRMHMRAH 265
                       68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.46E-6241268No hitNo description
PROSITE profilePS5015712.632243270IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-6243269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028243265IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
SMARTSM0035577304337IPR015880Zinc finger, C2H2-like
SMARTSM0035522342364IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MYGVTGHEDI GVVTSSSMDN NAASSTSPAD THSNTLLYNL SLLKDKVHQV QSLISVLVSP  60
PQIAGQSTAT TSMAIASMVT SIQELIVAAS SMMYACQQMS NASASSADNP TSRQELIPRQ  120
QEQQQQQQQQ QQHRIKPVGH GGLLSHHHSQ PTGIYASDQT FDWFADNSYV SSPAMGNNNS  180
GNSNRNNSSR PGQNGRDQAL PQPCGGQRGH NEGSTQGTSL KSGSSNFDII ELDASELLAK  240
YTHYCQICGK GFKRDANLRM HMRAHGDEYK TSSALSNPLK NSSGSNNSIG ADEKECPMKT  300
PRKYSCPQEG CRWNQKHAKF QPLKSMICVK NHYKRSHCPK MYVCKRCNRK QFSVLSDLRT  360
HEKHCGDLKW QCSCGTTFSR KDKLMGHVTL FVGHSPMINL TKPGKVDGQA ASHNVKADR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03926.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045298.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
RefseqXP_010045299.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A059DA800.0A0A059DA80_EUCGR; Uncharacterized protein
STRINGXP_010045298.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-107C2H2 family protein