PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03929.1.p
Common NameEUGRSUZ_B03929
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 344aa    MW: 35420 Da    PI: 7.135
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03929.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015158180123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+++F++   L  H  +H
  Eucgr.B03929.1.p 158 YECKTCSRVFPSFQALGGHRASH 180
                       99**********99999998887 PP
2zf-C2H212.20.00055239261123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F +   L  H+r+H
  Eucgr.B03929.1.p 239 HECNICGSEFASGQALGGHMRRH 261
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.8E-13157182IPR007087Zinc finger, C2H2
SuperFamilySSF576675.6E-8157180No hitNo description
PROSITE profilePS5015710.367158185IPR007087Zinc finger, C2H2
SMARTSM003550.12158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-4222262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.6E-8234261No hitNo description
PfamPF139125.1E-11239263IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.094239266IPR007087Zinc finger, C2H2
SMARTSM003550.037239261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDLEYPEEFL GGAHDHHSQI SKGKRTKRQR PASPSGGGCV GVGVGGGGGA ASSMTSCSSS  60
GGGGGRGGGG GGGDASSALS PSSSGNNVVY SSAEEEEEDL ANCLILLAQG DGRPRRVDCD  120
DHDGGKMGIF SSKKFSEVVA TAAADAGVAT GRAGFYVYEC KTCSRVFPSF QALGGHRASH  180
KKPKSTADPD QKIKPSTVVL GLDAIDDEDE GHSGKISPPL SAHVASHKGL HQASKPKIHE  240
CNICGSEFAS GQALGGHMRR HRSAPPPTAT SADATSPTNP PAAAAITTEK SRNILSLDLN  300
LPAPTEEDHH HQAHRRRENS KFQFATSQQP IILASPALVD CHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16371GGRGGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03929.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045301.20.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A059DAH20.0A0A059DAH2_EUCGR; Uncharacterized protein
STRINGXP_010045301.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.13e-41C2H2 family protein