PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B04019.1.p

Common Name

EUGRSUZ_B04019

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 258aa MW: 27838.6 Da PI: 8.965

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B04019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.1	5.4e-42	50	150	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vh++FGasnv+k+l+++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l+a+ Eucgr.B04019.1.p 50 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHRVFGASNVSKMLTEVPESQRADTANSLVYEANLRLRDPVYGCMGAISALQQQIQTLQAQ 142 7****************************************************************************************** PP DUF260 94 lallkeel 101 l+++++e+ Eucgr.B04019.1.p 143 LNAVRNEI 150 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.803	49	150	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-42	50	147	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MMGVGGARER LDEIAKKIKR EKDATYGDEM GRRHMMLSLS RTGTLNTITP CAACKLLRRR 60 CAEECPFSPY FSPHEPQKFA AVHRVFGASN VSKMLTEVPE SQRADTANSL VYEANLRLRD 120 PVYGCMGAIS ALQQQIQTLQ AQLNAVRNEI LRFKYREAVT TNHVQSNVVV PHSRTALNPT 180 AALAVSVVPP PTLSSSSSTA APPDPSPPPL PPPPSLVVPS SSSSSSSTSS LFTTPTSTTT 240 YSSISSETNT VHYFETI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-44	50	157	11	118	LOB family transfactor Ramosa2.1
5ly0_B	5e-44	50	157	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B04019.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010045408.1	0.0	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-72	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A059DAZ4	0.0	A0A059DAZ4_EUCGR; Uncharacterized protein
STRING	XP_010045408.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-72	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Eucgr.B04019.1.p

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]