PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00074.1.p
Common NameEUGRSUZ_C00074, LOC104435899
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26098.1 Da    PI: 7.7047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.1e-19108162256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ ++t+eq   Lee F+ + +++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Eucgr.C00074.1.p 108 RKKLRLTREQSALLEESFKLHTTLTPAQKQSLADQLKLKPRQVEVWFQNRRARSK 162
                       678899***********************************************98 PP
2HD-ZIP_I/II119.22.2e-38108196189
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                       +kk+rl++eq++lLEesF+ +++L+p +K++la +L+l+prqv+vWFqnrRAR k+kq+E+d+++Lk+++++l++en+rL+ke +eLr+
  Eucgr.C00074.1.p 108 RKKLRLTREQSALLEESFKLHTTLTPAQKQSLADQLKLKPRQVEVWFQNRRARSKLKQTEVDCQFLKKCCETLSDENRRLKKELQELRS 196
                       69*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.91E-1885165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-1892162IPR009057Homeodomain-like
PROSITE profilePS5007116.714104164IPR001356Homeobox domain
SMARTSM003893.4E-17106168IPR001356Homeobox domain
CDDcd000862.05E-17108165No hitNo description
PfamPF000463.8E-16108162IPR001356Homeobox domain
PROSITE patternPS000270139162IPR017970Homeobox, conserved site
PfamPF021832.4E-9164196IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.9E-16164204IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGDIEEACNT GLFLGLSVGG STTKRKEEKK KNKQNNDAPS TVGLGLSFSI NCSSSKVEAD  60
DHPWDSINNA EYPARSSFHN SFVDQSPDDH ISPPRTSNDD GGDFNGGRKK LRLTREQSAL  120
LEESFKLHTT LTPAQKQSLA DQLKLKPRQV EVWFQNRRAR SKLKQTEVDC QFLKKCCETL  180
SDENRRLKKE LQELRSSSSP YVQGPGTAAV MLCPSCEELT RGNSEATRKE NCDI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156164RRARSKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00074.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046899.11e-174PREDICTED: homeobox-leucine zipper protein HAT22
TrEMBLA0A059CJI41e-173A0A059CJI4_EUCGR; Uncharacterized protein
STRINGXP_010046899.11e-173(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2397433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-53HD-ZIP family protein