PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C00105.1.p

Common Name

EUGRSUZ_C00105, LOC104435920

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 259aa MW: 29191.7 Da PI: 8.4797

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C00105.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.4e-14	56	97	8	54
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr l+Pk + K++Ka+i++ A++YI++L Eucgr.C00105.1.p 56 LERNRRKKLNERLFALRALVPKiS------KMDKASIVKDAIDYIQDL 97 7*******************66......**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.253	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.24E-12	51	101	No hit	No description
SuperFamily	SSF47459	2.36E-16	53	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-16	54	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-12	55	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-16	56	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MESIDEEFRN YWETLMFFQS EELLHNSCVS EVISRFNGPS SPDAAALPVA SKSIDLERNR 60 RKKLNERLFA LRALVPKISK MDKASIVKDA IDYIQDLREQ EGKIRAEIAE LESVILKKNP 120 GFKFEGERSP PAHPKSKRKR AKLRHDISKS PDITPIEVLE LRVMEAGEKS VVISLTCSNR 180 GDAMVRLCQA FESLKLKIVA ANITALPEEL LKMVFIEKEE KQGKEHIQSK IQAAIAALNS 240 HHAEPTDASM KQLMSRDI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C00105.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046924.1	0.0	PREDICTED: transcription factor bHLH35 isoform X1
TrEMBL	A0A059CKE7	0.0	A0A059CKE7_EUCGR; Uncharacterized protein
STRING	XP_010046924.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6367	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29930.1	2e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.C00105.1.p
Entrez Gene	104435920