PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00105.2.p
Common NameEUGRSUZ_C00105, LOC104435920
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 258aa    MW: 29104.7 Da    PI: 8.4797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00105.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-145596854
                      HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                       Er+RR+++N++++ Lr l+Pk +      K++Ka+i++ A++YI++L
  Eucgr.C00105.2.p 55 LERNRRKKLNERLFALRALVPKiS------KMDKASIVKDAIDYIQDL 96
                      7*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2534796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.43E-1250100No hitNo description
SuperFamilySSF474592.36E-1652112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1653102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-125496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1655112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MESIDEEFRN YWETLMFFQS EELLHNCVSE VISRFNGPSS PDAAALPVAS KSIDLERNRR  60
KKLNERLFAL RALVPKISKM DKASIVKDAI DYIQDLREQE GKIRAEIAEL ESVILKKNPG  120
FKFEGERSPP AHPKSKRKRA KLRHDISKSP DITPIEVLEL RVMEAGEKSV VISLTCSNRG  180
DAMVRLCQAF ESLKLKIVAA NITALPEELL KMVFIEKEEK QGKEHIQSKI QAAIAALNSH  240
HAEPTDASMK QLMSRDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00105.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046925.10.0PREDICTED: transcription factor bHLH35 isoform X2
TrEMBLA0A059CJQ90.0A0A059CJQ9_EUCGR; Uncharacterized protein
STRINGXP_010046924.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-62bHLH family protein