PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00114.1.p
Common NameEUGRSUZ_C001142, LOC104435928
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HB-other
Protein Properties Length: 226aa    MW: 25848.7 Da    PI: 10.6384
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00114.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.71.5e-111054953
                      HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
          Homeobox  9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
                      ++ +e L ++F++n  ps++ +e LAk+ gL+ ++V+ WF+N R+
  Eucgr.C00114.1.p 10 PTAVEKLRQVFAENELPSRSVKENLAKEFGLEPEKVSKWFKNARY 54
                      67899**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.908159IPR001356Homeobox domain
SMARTSM003891.4E-10163IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-12253IPR009057Homeodomain-like
CDDcd000868.33E-9254No hitNo description
SuperFamilySSF466894.18E-11261IPR009057Homeodomain-like
PfamPF000464.3E-9954IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRRRIFRIPP TAVEKLRQVF AENELPSRSV KENLAKEFGL EPEKVSKWFK NARYMALKTR  60
KAGGADQPPK SPQKHKESEL TKMMKGAAPI LSKDASTDIE FHSSLNTEKV IQQKSTKPIH  120
GKGSPTVPEH SYMENFEFDD NMSLKQIKLL KGKPKDRKRV DFAASEGLRE REAQLRELCK  180
IRSRLDSLRK RTLTFQSSES KASDEFNTCR SRVVYVPVAE IKERA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00114.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046935.11e-165PREDICTED: uncharacterized protein LOC104435928 isoform X1
TrEMBLA0A059CJM31e-164A0A059CJM3_EUCGR; Uncharacterized protein
STRINGXP_010046935.11e-165(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-25pathogenesis related homeodomain protein A