PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C00114.2.p

Common Name

EUGRSUZ_C001142

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HB-other

Protein Properties

Length: 226aa MW: 25819.7 Da PI: 10.6031

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C00114.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.6	7.8e-12	10	54	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e+L ++F++n ps++ +e LAk+ gL+ ++V+ WF+N R+ Eucgr.C00114.2.p 10 PTAVEVLRQVFAENELPSRSVKENLAKEFGLEPEKVSKWFKNARY 54 67899**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	4.6E-11	1	63	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.94	1	59	IPR001356	Homeobox domain
CDD	cd00086	3.41E-9	2	54	No hit	No description
SuperFamily	SSF46689	1.63E-11	2	61	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-13	2	53	IPR009057	Homeodomain-like
Pfam	PF00046	2.2E-9	9	54	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MRRRIFRIPP TAVEVLRQVF AENELPSRSV KENLAKEFGL EPEKVSKWFK NARYMALKTR 60 KAGGADQPPK SPQKHKESEL TKMMKGAAPI LSKDASTDIE FHSSLNTEKV IQQKSTKPIH 120 GKGSPTVPEH SYMENFEFDD NMSLKQIKLL KGKPKDRKRV DFAASEGLRE REAQLRELCK 180 IRSRLDSLRK RTLTFQSSES KASDEFNTCR SRVVYVPVAE IKERA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C00114.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046935.1	1e-164	PREDICTED: uncharacterized protein LOC104435928 isoform X1
TrEMBL	A0A059CK95	1e-164	A0A059CK95_EUCGR; Uncharacterized protein
STRING	XP_010046935.1	1e-164	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	9e-25	pathogenesis related homeodomain protein A

Link Out ? help Back to Top
Phytozome	Eucgr.C00114.2.p