PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00171.1.p
Common NameEUGRSUZ_C00171
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 152aa    MW: 17076.9 Da    PI: 8.1205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00171.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163759123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C k F ++  L  H++ H
  Eucgr.C00171.1.p 37 YSCNFCQKKFYSSQALGGHQNAH 59
                      99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-73364No hitNo description
Gene3DG3DSA:3.30.160.601.2E-43562IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2813764IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEHQSNPWHQ SSSANNHRQL NLELGLEPFP AKDNKLYSCN FCQKKFYSSQ ALGGHQNAHK  60
LERTLAKKSR DLCSAAKPPA ATSNGHHVRP SFQSVVYENQ PRLARHVGDD MRYAGTNPLY  120
GSSWSQGYIE VPDHDGDLRE DFSQLDLSLR L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00171.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050236.11e-104PREDICTED: zinc finger protein 2
TrEMBLA0A059CJZ31e-109A0A059CJZ3_EUCGR; Uncharacterized protein
STRINGXP_010050236.11e-104(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-23zinc finger protein 2