PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00238.1.p
Common NameEUGRSUZ_C00238
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 336aa    MW: 38246.3 Da    PI: 7.2494
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00238.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.71.2e-1249106156
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                       s y+GV++++++gr++A+++d  ++n  ++++ + g ++ +e Aa+a++ a++k++ge
  Eucgr.C00238.1.p  49 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNRKGRQGAYDDEETAARAYDLAALKYWGE 106
                       57*******************99998888866666********************997 PP
2AP252.41.3e-16148199155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Eucgr.C00238.1.p 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 199
                       89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.29E-1749115No hitNo description
PfamPF008478.2E-949106IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1549115IPR016177DNA-binding domain
SMARTSM003807.1E-2050119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1250114IPR001471AP2/ERF domain
PROSITE profilePS5103218.450113IPR001471AP2/ERF domain
PRINTSPR003676.2E-65162IPR001471AP2/ERF domain
CDDcd000184.57E-24148209No hitNo description
PfamPF008474.1E-12148199IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17148208IPR016177DNA-binding domain
PROSITE profilePS5103218.321149207IPR001471AP2/ERF domain
SMARTSM003802.7E-25149213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-17149207IPR001471AP2/ERF domain
PRINTSPR003676.2E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAKLSQQNQR NNVNNNKRNE NVRGNNGGVT KVKRTRRSVP RESPPQRSSI YRGVTRHRWT  60
GRYEAHLWDK NCWNESQNRK GRQGAYDDEE TAARAYDLAA LKYWGEGTIL NFPLSTYEKE  120
LKEMEGQSRE EYIGTLRRKS NGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAAIAY DMAAIEYRGL DAVTNFDPSR YIKGLEPNDN NNLIQSQTST NADLNPSLSL  240
VNSSLPASSH QLGISYFQNQ QTDSSKFKEM MEMTSAVDCS SSSRESELPQ CVSFPDEVKT  300
HFECHDFSCG TETDDMIFAD LCLVSHPMFE LELEA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00238.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018726073.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-104AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A059CK230.0A0A059CK23_EUCGR; Uncharacterized protein
STRINGXP_010050254.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-102ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]