PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00348.3.p
Common NameEUGRSUZ_C00348
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 454aa    MW: 49144.5 Da    PI: 8.8805
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00348.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.71.1e-23142197359
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       DgynWrKYGqK+vk+ + +rsY+rCt ++C++kk +e+s+   +++e++Y+++Hnh+
  Eucgr.C00348.3.p 142 DGYNWRKYGQKQVKSPKGSRSYFRCTNSDCSAKK-IECSDLLSQTTETVYRSSHNHD 197
                       9*******************************98.*********************7 PP
2WRKY98.44.4e-31315372259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k+ve++ ++ ++v+itY+g H+h+
  Eucgr.C00348.3.p 315 ADGYRWRKYGQKMVKGNPYPRNYYRCTSAGCPVRKQVETALDNASAVTITYKGIHDHD 372
                       6********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.844135199IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-19138199IPR003657WRKY domain
SMARTSM007746.5E-22140198IPR003657WRKY domain
SuperFamilySSF1182907.45E-18141199IPR003657WRKY domain
PfamPF031061.4E-17142197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-32299374IPR003657WRKY domain
PROSITE profilePS5081130.572309374IPR003657WRKY domain
SuperFamilySSF1182904.45E-27310374IPR003657WRKY domain
SMARTSM007741.1E-35314373IPR003657WRKY domain
PfamPF031062.4E-24316371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEDRGSDTSD ALQTDDETTE ESESESEEER LRDLQEFRVA RLGEPRGPPL AAAAGGGGGR  60
LEATSLCAGG SHVISASREE PEERANQLNG ELGSDITVAS STPLDRKLPP TTKVTDSCTV  120
RSKVRNSSDC GTTSAVKASG GDGYNWRKYG QKQVKSPKGS RSYFRCTNSD CSAKKIECSD  180
LLSQTTETVY RSSHNHDPPQ KVRDGRQRSR VKSSRIIVES EVAKHPVRML PESDPSVASR  240
EQKNELPSSV PGREIQEANG FDANYGIVAK QGNDNDPELK PRGKKNRLIR SSSPLKPGKK  300
PKFVVHAAGD VGISADGYRW RKYGQKMVKG NPYPRNYYRC TSAGCPVRKQ VETALDNASA  360
VTITYKGIHD HDRPVPKKRN GPPSVPLIAA ASSDSLHSTP IKKSDGLRDH TSPTQCSVDS  420
EGELSSQALD LGGEKAIESA RTLLSIGFEI KPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23302374274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00348.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047108.10.0PREDICTED: probable WRKY transcription factor 32
SwissprotP595831e-102WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A059CKH90.0A0A059CKH9_EUCGR; Uncharacterized protein
STRINGXP_010047108.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.13e-98WRKY DNA-binding protein 32