PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C00360.1.p

Common Name

EUGRSUZ_C00360

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 325aa MW: 32573.3 Da PI: 9.8979

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C00360.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.3e-11	110	155	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq Eucgr.C00360.1.p 110 HSIAERLRRERIAERMRSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 155 99*********************55......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.95E-13	103	159	No hit	No description
SuperFamily	SSF47459	5.37E-17	103	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.199	105	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-16	107	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	110	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-13	111	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MMMHQQHQML LAPHDVVDGS GQGGGGHGGG SVQSLYNGFA GPLHASSGQA PNPAQLFHPP 60 QGGATQAPPN FTAQAAAGAA ASASTGGGAA PAQPKQQRVR ARRGQATDPH SIAERLRRER 120 IAERMRSLQE LVPNGNKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA AMAPLMAAMS 180 EGGGGDSIQA GANGAALGRN GSSGGNQGAP AGEGVTAAEH QVARLMEEDM GSAMQYLQGK 240 GLCLMPISLA TTISTANTSH RTRNHPAAAG ANSRAQNTAL RPGGEGPTSP SASVLTVQSA 300 ATLGNGPGLD GGSSGKDNAS VSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	30	SGQGGGGHGGGS
2	114	119	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C00360.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010047123.1	0.0	PREDICTED: transcription factor bHLH69
Swissprot	Q9ZUG9	3e-80	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A059CKH0	0.0	A0A059CKH0_EUCGR; Uncharacterized protein
STRING	XP_010047123.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-53	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Eucgr.C00360.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]