PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00602.1.p
Common NameEUGRSUZ_C00602, LOC104436257
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 386aa    MW: 41245.7 Da    PI: 6.0489
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00602.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.2e-18272306135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +C+t kTp+WR gp g+ktLCnaCG++y++ +l
  Eucgr.C00602.1.p 272 CLHCQTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 306
                       99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.9E-7630362IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.503266302IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-18266316IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-15270329No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14270304IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.38E-14271318No hitNo description
PROSITE patternPS003440272297IPR000679Zinc finger, GATA-type
PfamPF003208.4E-16272306IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEAPEIKAEA PEFFQPGFCS PQFAPERRHS LDGKAGGGCG GDPFMVDDLL DFSTTDDAVG  60
GGGCGGGGGD GAFDNVTGSS TDSNVTAMDS CNSSFSGYDP NFGDGIGGCH RGFAEGHFAS  120
DLCVPYDDLA ELEWLSNFAE ESFSSEDLQK LQLISGMKAR PDAAAAYETT AREFQPEPNR  180
GGPIFHPDMS VPAKARSKRS RAAPGSWSSR LLVLSQSDPA PDDDGAGGPG GAPRPVAGKK  240
TVRAAPKKKQ PGLDGPDGPD GPEAGGGEVR RCLHCQTDKT PQWRTGPMGP KTLCNACGVR  300
YKSGRLVPEY RPAASPTFVL TRHSNSHRKV LELRRQKEMM RAQQLHQQQQ QFLHQGHHQS  360
MVFDASNGED YLIHQHVGPD FRQLM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00602.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767512e-60AK376751.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3134K02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047283.10.0PREDICTED: GATA transcription factor 12
SwissprotP697813e-91GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A059CL940.0A0A059CL94_EUCGR; GATA transcription factor
STRINGXP_010047283.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-76GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]