PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00624.1.p
Common NameEUGRSUZ_C00624, LOC104436278
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 295aa    MW: 32047.7 Da    PI: 7.9286
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00624.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd  l+ + + +G+g +W + +++ g++R++k+c++rw++yl
  Eucgr.C00624.1.p 14 RGPWSPEEDATLKSYLEAHGTGgNWIALPKKAGLRRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
2Myb_DNA-binding43.29.4e-1469111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T++Ed ++ ++ ++ G++ W+ Ia+ ++ gRt++++k++w++
  Eucgr.C00624.1.p  69 GGFTEDEDNIICNLYNEIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.316962IPR017930Myb domain
SuperFamilySSF466893.07E-2711109IPR009057Homeodomain-like
SMARTSM007174.2E-111364IPR001005SANT/Myb domain
PfamPF002492.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-241569IPR009057Homeodomain-like
CDDcd001673.34E-81662No hitNo description
PROSITE profilePS5129420.46963117IPR017930Myb domain
SMARTSM007171.0E-1267115IPR001005SANT/Myb domain
PfamPF002491.9E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2370116IPR009057Homeodomain-like
CDDcd001675.08E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKSYLE AHGTGGNWIA LPKKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEDEDNIIC NLYNEIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKRLAG  120
KVNGANNSSY NTMSTSNAPA LLGFASNHPS GSPNLDMYHR GFSVSGINTF TAAECQVIYD  180
RATTANVPNS AYYPYTGFDH IKSNEIEASS KVSTSSISNS SSISSSSSSL AMDGKPSLLT  240
CDKGTLDEAA AMMDFGFGFP FDAVNNGIWF QERAQDNSLN CGSYISSSDL NYIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00624.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150369e-31AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047308.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A059CLD00.0A0A059CLD0_EUCGR; Uncharacterized protein
STRINGXP_010047308.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.18e-74myb domain protein 68