PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00675.2.p
Common NameEUGRSUZ_C00675, LOC104436327
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 120aa    MW: 13465.7 Da    PI: 4.5858
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00675.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.21.1e-1098119122
                       ---SS-EEEEEEE--TT-SS-E CS
              WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                       ldDg++WrKYG+K+vk+s++pr
  Eucgr.C00675.2.p  98 LDDGFKWRKYGKKMVKNSPNPR 119
                       59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-1284119IPR003657WRKY domain
SuperFamilySSF1182908.76E-991119IPR003657WRKY domain
PROSITE profilePS5081113.59793119IPR003657WRKY domain
PfamPF031063.3E-699119IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSDSPNLRSP DSPDMDFNDQ SDFELSEFLK IDEWLGDDPA SMVHGAPANY FYQSNEADDS  60
IGSSSNPEGP SRHAEGGKEK KEVKERFAFK TKSEVEILDD GFKWRKYGKK MVKNSPNPR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00675.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047371.13e-82PREDICTED: probable WRKY transcription factor 50
SwissprotQ8VWQ56e-22WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A059CLX97e-81A0A059CLX9_EUCGR; Uncharacterized protein
TrEMBLA0A059CMV42e-81A0A059CMV4_EUCGR; Uncharacterized protein
STRINGXP_010047371.11e-81(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-24WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]