PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00865.3.p
Common NameEUGRSUZ_C00865
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 206aa    MW: 23022.9 Da    PI: 10.2671
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00865.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-13556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT+eE+e l  +v+++G+g Wk I r          R+  ++k++w++ 
  Eucgr.C00865.3.p  5 KQKWTQEEEEALRAGVAKHGTGKWKDIQRDPEfnkflFSRSNIDLKDKWRNM 56
                      79********************************99989***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.452161IPR017930Myb domain
SMARTSM007176.5E-9459IPR001005SANT/Myb domain
PfamPF002498.7E-10556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-15557IPR009057Homeodomain-like
CDDcd116601.95E-21657No hitNo description
SuperFamilySSF466898.61E-15658IPR009057Homeodomain-like
SMARTSM005267.0E-20114179IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.81E-16114196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-15116186IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150426.059116184IPR005818Linker histone H1/H5, domain H15
PfamPF005382.9E-12118177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGNPKQKWTQ EEEEALRAGV AKHGTGKWKD IQRDPEFNKF LFSRSNIDLK DKWRNMIGGA  60
SGQGQRDKSR AKAKASSDAP STLPSLPNAP NVPVSDEATA EPATDGAQRI ADDGKNTPRY  120
NAMIFEALQT LKDPNGSDTA AIFNYIEKRQ EVPQNFRRLL SSRLRRLVAQ EKLEKVQNCF  180
KIKEIASFET KTPAPKEQDV RPKQL*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00865.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047536.11e-151PREDICTED: single myb histone 4 isoform X2
RefseqXP_018725342.11e-151PREDICTED: single myb histone 4 isoform X1
SwissprotF4IEY46e-54TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A059CM031e-150A0A059CM03_EUCGR; Uncharacterized protein
TrEMBLA0A059CMN41e-150A0A059CMN4_EUCGR; Uncharacterized protein
STRINGXP_010047536.11e-150(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-47MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]