PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00873.1.p
Common NameEUGRSUZ_C00873
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 478aa    MW: 52812.8 Da    PI: 4.321
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00873.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.18.8e-361382272100
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Flkk++e++ed+e+++++swse+ +sfvv+d++ef+k++LpkyFkh+nf+SF+RQLn+YgF+k++ ++         weF+++ F+ gkk+ll
  Eucgr.C00873.1.p 138 FLKKTFEMVEDPETDSVVSWSESRDSFVVWDQHEFSKDLLPKYFKHQNFSSFIRQLNTYGFRKIDPDR---------WEFANQGFRGGKKHLL 221
                       9****************************************************************999.........**************** PP

                       XXXXXX CS
      HSF_DNA-bind  95 ekikrk 100
                       ++ikr+
  Eucgr.C00873.1.p 222 KNIKRR 227
                       *****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-58134227IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.76E-35134227IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-38135227IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.3E-19138161IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-32138227IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-19176188IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340177201IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-19189201IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MVAEGSGGGG VPGTTVPSVP SSVKREEPVV ETGTTVNGKV GLDLDGGGGG EGGAVGRGPS  60
SSFSGLPVVS KEEEEVEEEE EEEEEAEEDA EMVTDRVAAC GNGNNGSSSC SSTSPPPPPP  120
EGVPKPMEGL NEAGLPPFLK KTFEMVEDPE TDSVVSWSES RDSFVVWDQH EFSKDLLPKY  180
FKHQNFSSFI RQLNTYGFRK IDPDRWEFAN QGFRGGKKHL LKNIKRRGRI TKKQQGPTIP  240
EDIQTMEMDF QRTEVESEIR TLKEDQEILK SDILELRQQQ ECSLSEIGSV EEQIRCAECR  300
QQQMFLFLAK AVKNPHFVEQ LVQKRKPSRE IQAGKFIKKR RLLTSEPDPN RCDFEGTNDD  360
KSSACGDGQK GILSERVDPK PDGFANPLSN ENFTDALELK FNNVMLHEDA STIYDAMSEK  420
LLDDSSLIAE GEIGEELAIN DSNIYMELEY LIGEPCDWGR VNELKEQPVA LMPSPAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2513522726129Heat shock factor protein 1
5d5v_B4e-2513522726129Heat shock factor protein 1
5d5v_D4e-2513522726129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220226LKNIKRR
2323340KRKPSREIQAGKFIKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00873.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047549.20.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A059CNJ90.0A0A059CNJ9_EUCGR; Uncharacterized protein
STRINGXP_010047549.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-81heat shock transcription factor A2