PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00899.1.p
Common NameEUGRSUZ_C00899, LOC104436489
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 317aa    MW: 34809.4 Da    PI: 9.7973
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00899.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA596.2e-19172205134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C+ C+t+kTplWR+gp g+ktLCnaCG+++rk +
  Eucgr.C00899.1.p 172 CVDCNTSKTPLWRSGPKGPKTLCNACGIRQRKVR 205
                       *******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-18166217IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.861166202IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-12167206No hitNo description
Gene3DG3DSA:3.30.50.108.3E-16170204IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.09E-13171206No hitNo description
PROSITE patternPS003440172197IPR000679Zinc finger, GATA-type
PfamPF003201.9E-16172205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTPDDRTREL NEYQEESLAS RPQPHHHRQA TSPCFSSIIT PNYVLHSSVE EQGGSFHRAS  60
QPSDRGLEAL PAPISITTSQ KLEDQRVEED HQKGRHEHSS SSSSSSSSPP FKWTSSKMRM  120
MRKMMISEKR PPPNKSSAHE SEDRPYPDSI TLSCPQMDSN GGCSGNTAVR VCVDCNTSKT  180
PLWRSGPKGP KTLCNACGIR QRKVRRAMAA AAAAANGTVV PTPTMTLPAK CKLKNKDNKR  240
PGSKAAIDQE SETIKKRFKL PPPTLASSKE TKQLCLEDFA ARLSKRYSAN LQRVFPQEEK  300
EAAILLMALS CGLVHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00899.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047576.10.0PREDICTED: GATA transcription factor 21
TrEMBLA0A059CM450.0A0A059CM45_EUCGR; Uncharacterized protein
STRINGXP_010047576.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-28cytokinin-responsive gata factor 1