PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C01014.1.p
Common NameEUGRSUZ_C01014
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 181aa    MW: 20460.4 Da    PI: 7.4552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C01014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-1061148181
                       EEEE-..-HHHHT.T-EE--H.HH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                B3   1 ffkvltpsdvlks.grlvlpk.kfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                       f+k+lt+sd     +rl + k +fa+++      g + e ++ ++  ++ g+ + ++++++ ++ ++v+t+GW+ Fvk+n+L++ D+v 
  Eucgr.C01014.1.p  61 FEKQLTTSDIIGIqSRLLVNKtDFATSIlpllekGDDIEVGIPVKTFNPAGKAYPMTFKIWCGR-SHVITSGWNLFVKDNRLEVSDIVR 148
                       899999999876644555554156777799999855556677788899**********766554.69*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-1360155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-1361164IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-1261164No hitNo description
SMARTSM010190.009661168IPR003340B3 DNA binding domain
PROSITE profilePS508638.543108168IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MELNKEQGVR PMQQHRQSKT IQASSCPSRP QYDPQHSATG LHLVRIVNTL IDSIGDCSEP  60
FEKQLTTSDI IGIQSRLLVN KTDFATSILP LLEKGDDIEV GIPVKTFNPA GKAYPMTFKI  120
WCGRSHVITS GWNLFVKDNR LEVSDIVRVW AFRDVWTREL CLLISSRKPE VQQPIEKEET  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C01014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050479.11e-133PREDICTED: putative B3 domain-containing protein At4g03160
TrEMBLA0A059CMH91e-131A0A059CMH9_EUCGR; Uncharacterized protein
STRINGXP_010050479.11e-132(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-22B3 family protein