PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C01515.1.p

Common Name

EUGRSUZ_C01515, LOC104436916

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

YABBY

Protein Properties

Length: 185aa MW: 20764.7 Da PI: 8.5905

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C01515.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	199.3	1.6e-61	9	157	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +eq+Cy+ CnfCn +lavsvP +sl+ +vt+rCGhC++l svn+a a q la ++ + ++++++ + ++++ ++ +++ Eucgr.C01515.1.p 9 PTEQLCYIPCNFCNIVLAVSVPCSSLLDIVTIRCGHCSNLWSVNMAAAFQSLANWQD------------AQAPKQDCRMDMGSSSKYNSRITM 89 689***************************************9999988877664............444455555555444444444444 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+n +e+ v+rPPekrqrvPsayn+fikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Eucgr.C01515.1.p 90 RAPSTNVTEQ----RVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157 3334444443....4589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.9E-70	9	157	IPR006780	YABBY protein
SuperFamily	SSF47095	3.93E-8	101	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	106	149	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MASCVDITPT EQLCYIPCNF CNIVLAVSVP CSSLLDIVTI RCGHCSNLWS VNMAAAFQSL 60 ANWQDAQAPK QDCRMDMGSS SKYNSRITMR APSTNVTEQR VVNRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLMLD NNNQAKMDNH SEKHLMSRAA 180 LLNK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C01515.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010048072.1	1e-137	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	7e-84	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A059CP63	1e-136	A0A059CP63_EUCGR; Uncharacterized protein
STRING	XP_010048072.1	1e-136	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-86	YABBY family protein

Link Out ? help Back to Top
Phytozome	Eucgr.C01515.1.p
Entrez Gene	104436916

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]