PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C01515.4.p

Common Name

EUGRSUZ_C01515, LOC104436916

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

YABBY

Protein Properties

Length: 133aa MW: 15135.1 Da PI: 10.5823

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C01515.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	137.1	2e-42	19	105	80	170
YABBY 80 enlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++++ s+s+++s ++ + +v+++ v+rPPekrqrvPsayn+fikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Eucgr.C01515.4.p 19 QDCRMD---MGSSSKYNSRITMRAPS-TNVTEQRVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 105 333333...33444444444443333.334445669*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.5E-41	14	105	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-8	48	98	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	8.5E-5	52	99	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MAAAFQSLAN WQDAQAPKQD CRMDMGSSSK YNSRITMRAP STNVTEQRVV NRPPEKRQRV 60 PSAYNQFIKE EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLMLDNN NQAKMDNHSE 120 KHLMSRAALL NK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C01515.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010048072.1	3e-95	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	8e-50	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A059CP63	7e-94	A0A059CP63_EUCGR; Uncharacterized protein
TrEMBL	A0A059CPL2	3e-94	A0A059CPL2_EUCGR; Uncharacterized protein
STRING	XP_010048072.1	1e-94	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-52	YABBY family protein

Link Out ? help Back to Top
Phytozome	Eucgr.C01515.4.p
Entrez Gene	104436916

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]