PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C01515.5.p

Common Name

EUGRSUZ_C01515, LOC104436916

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

YABBY

Protein Properties

Length: 111aa MW: 12702.4 Da PI: 10.8288

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C01515.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	136.2	3.8e-42	8	83	94	170
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++s ++ + +v+++ v+rPPekrqrvPsayn+fikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Eucgr.C01515.5.p 8 KYNSRITMRAP-STNVTEQRVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 83 44444444333.3444555679*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.3E-40	12	83	IPR006780	YABBY protein
SuperFamily	SSF47095	1.2E-8	26	76	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.6E-5	30	77	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MDMGSSSKYN SRITMRAPST NVTEQRVVNR PPEKRQRVPS AYNQFIKEEI QRIKASNPDI 60 SHREAFSTAA KNWAHFPHIH FGLMLDNNNQ AKMDNHSEKH LMSRAALLNK *

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C01515.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010048072.1	8e-78	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	6e-49	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A059CP63	2e-76	A0A059CP63_EUCGR; Uncharacterized protein
TrEMBL	A0A059CPL2	2e-76	A0A059CPL2_EUCGR; Uncharacterized protein
TrEMBL	A0A059CQE3	2e-76	A0A059CQE3_EUCGR; Uncharacterized protein
STRING	XP_010048072.1	3e-77	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-51	YABBY family protein

Link Out ? help Back to Top
Phytozome	Eucgr.C01515.5.p
Entrez Gene	104436916

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]