PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C01587.1.p
Common NameEUGRSUZ_C01587, LOC104436949
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 379aa    MW: 41230.8 Da    PI: 5.4347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C01587.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.8e-07166187223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C +Cgk F+r  nL+ H+r H
  Eucgr.C01587.1.p 166 FCDICGKGFKRDANLRMHMRAH 187
                       6*******************99 PP
2zf-C2H212.20.00054250273123
                       EEETTTT.EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                       y+C+ C+ ksFs   +Lk+H++ +
  Eucgr.C01587.1.p 250 YSCNRCNkKSFSVLADLKSHLKHC 273
                       99*******************977 PP
3zf-C2H211.80.00075281297521
                       TTTEEESSHHHHHHHHH CS
           zf-C2H2   5 dCgksFsrksnLkrHir 21 
                        Cg+sFsrk+ L  H+ 
  Eucgr.C01587.1.p 281 SCGTSFSRKDKLFGHMA 297
                       5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.07E-6162188No hitNo description
PROSITE profilePS5015711.905165192IPR007087Zinc finger, C2H2
SMARTSM003550.0017165187IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.2E-6165187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SMARTSM0035546212245IPR015880Zinc finger, C2H2-like
SMARTSM0035514250272IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-4272297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355210278302IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MNTPAAEEAH PAPPEPSGAG GSVPVPVPVP VPVGDGDPRV PLLNLATVSV KMDSVQQFLS  60
QSLRSNALLS KDQMGMVSAE IASAIHQVVV NGAALLACFQ NPSPDPEPWR ADPKLLPPAP  120
AAVNPVDPAV ARPPEVELKD EKDELDADCE IVELDAVELL AEHVHFCDIC GKGFKRDANL  180
RMHMRAHGNQ FKTPEALAKP DRCVDAPRKT RFSCPFDGCN RNKGHKKFRP LKSVICVKNH  240
FKRSHCPKMY SCNRCNKKSF SVLADLKSHL KHCGESKWKC SCGTSFSRKD KLFGHMALFE  300
GHMPAVAIDD EEKASGFVPM EEDDEDEDAK IEDEELASNS VDSGFFDGLL DGFGSLDNFS  360
FQDVLNGMGS GMQEFPRV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C01587.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048109.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N54e-79STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A059CP400.0A0A059CP40_EUCGR; Uncharacterized protein
STRINGXP_010048109.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69772644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.39e-76C2H2 family protein
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]