PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C01686.1.p
Common NameEUGRSUZ_C01686
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 386aa    MW: 42767.8 Da    PI: 6.3984
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C01686.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.6e-073203532154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp++e++ +L +++gL+ +q+ +WF N+R +
  Eucgr.C01686.1.p 320 KWPYPTEEDKVKLVQETGLQLKQINNWFINQRKR 353
                       569*****************************87 PP
2ELK292.5e-10274295122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y+++++++++E++
  Eucgr.C01686.1.p 274 ELKHELKQGYKEKIVDIREEIL 295
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.6E-19105149IPR005540KNOX1
PfamPF037902.3E-17108147IPR005540KNOX1
SMARTSM012561.5E-29162217IPR005541KNOX2
PfamPF037911.8E-21166216IPR005541KNOX2
SMARTSM011886.1E-4274295IPR005539ELK domain
PfamPF037898.8E-7274295IPR005539ELK domain
PROSITE profilePS512139.969274294IPR005539ELK domain
PROSITE profilePS5007111.661294357IPR001356Homeobox domain
SMARTSM003893.1E-11296361IPR001356Homeobox domain
SuperFamilySSF466893.25E-16296360IPR009057Homeodomain-like
CDDcd000862.28E-12297356No hitNo description
Gene3DG3DSA:1.10.10.601.9E-25301359IPR009057Homeodomain-like
PfamPF059201.7E-17314353IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSFPDNHLSH DDLSSHLHHH PHHFPHQPPP PSHEPSPTTG ASSAPNWLNA ALFHNPTANF  60
LNLHTSPHPS SSDAMTGVIA PPPDAAEGER RDDDGVGALE DWRDARHKAE IVSHPLYEQL  120
LSAHVACLRI ATPVDQLPRI DSQLAQSAQV VAKYSALGAA AGHDGVGDDK ELDQFMSHYV  180
LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSLTGVSP GQGTGATMSD DEDDPIDSDA  240
TLFDGGLDGP DSMGFGPLIP TETERSLMER VRQELKHELK QGYKEKIVDI REEILRKRRA  300
GKLPGDTTSV LKAWWQSHAK WPYPTEEDKV KLVQETGLQL KQINNWFINQ RKRNWHSNSS  360
SSSVSKSKRK RSLKIDCCLV NAKLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350370RKRNWHSNSSSSSVSKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C01686.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048153.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-176KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A059CQ110.0A0A059CQ11_EUCGR; Uncharacterized protein
STRINGXP_010048153.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-149KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]